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Teresita Porter 🙋🏻‍♀️Applying environmental DNA metabarcoding to calculate an index of biotic integrity for freshwater fish<a href="https://www.biorxiv.org/content/10.1101/2025.05.26.656190v1" rel="nofollow noopener" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2025.05.26.656190v1</a><a href="https://ecoevo.social/tags/environmentalDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#environmentalDNA</a> <a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://ecoevo.social/tags/freshwater" class="mention hashtag" rel="nofollow noopener" target="_blank">#freshwater</a> <a href="https://ecoevo.social/tags/fish" class="mention hashtag" rel="nofollow noopener" target="_blank">#fish</a> <a href="https://ecoevo.social/tags/IndexOfBioticIntegrity" class="mention hashtag" rel="nofollow noopener" target="_blank">#IndexOfBioticIntegrity</a>

nf-corePipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!Please see the changelog: <a href="https://github.com/nf-core/ampliseq/releases/tag/2.14.0" rel="nofollow noopener" translate="no" target="_blank">https://github.com/nf-core/ampliseq/releases/tag/2.14.0</a><a href="https://mstdn.science/tags/16s" class="mention hashtag" rel="nofollow noopener" target="_blank">#16s</a> <a href="https://mstdn.science/tags/18s" class="mention hashtag" rel="nofollow noopener" target="_blank">#18s</a> <a href="https://mstdn.science/tags/ampliconsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#ampliconsequencing</a> <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener" target="_blank">#edna</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/iontorrent" class="mention hashtag" rel="nofollow noopener" target="_blank">#iontorrent</a> <a href="https://mstdn.science/tags/its" class="mention hashtag" rel="nofollow noopener" target="_blank">#its</a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#pacbio</a> <a href="https://mstdn.science/tags/qiime2" class="mention hashtag" rel="nofollow noopener" target="_blank">#qiime2</a> <a href="https://mstdn.science/tags/rrna" class="mention hashtag" rel="nofollow noopener" target="_blank">#rrna</a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener" target="_blank">#taxonomicclassification</a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener" target="_blank">#taxonomicprofiling</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

Teresita Porter 🙋🏻‍♀️The distribution of genetic diversity in ecological communities: A unifying measure for monitoring biodiversity change<a href="https://ecoevorxiv.org/repository/view/9169/" rel="nofollow noopener" translate="no" target="_blank">https://ecoevorxiv.org/repository/view/9169/</a>TLDR - CGD - distribution of nucleotide diversity values across all OTUs in a community sample<a href="https://ecoevo.social/tags/CommunityGeneticDistribution" class="mention hashtag" rel="nofollow noopener" target="_blank">#CommunityGeneticDistribution</a> <a href="https://ecoevo.social/tags/CGD" class="mention hashtag" rel="nofollow noopener" target="_blank">#CGD</a> <a href="https://ecoevo.social/tags/biodiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#biodiversity</a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://ecoevo.social/tags/OTU" class="mention hashtag" rel="nofollow noopener" target="_blank">#OTU</a>

Teresita Porter 🙋🏻‍♀️Capture—Incubate—Release: An Animal-Friendly Approach to Assess Local Aquatic Macroinvertebrate Species Diversity Through Environmental DNA Metabarcoding<a href="https://onlinelibrary.wiley.com/doi/10.1002/edn3.70112" rel="nofollow noopener" translate="no" target="_blank">https://onlinelibrary.wiley.com/doi/10.1002/edn3.70112</a><a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://ecoevo.social/tags/macroinvertebrate" class="mention hashtag" rel="nofollow noopener" target="_blank">#macroinvertebrate</a> <a href="https://ecoevo.social/tags/nondestructive" class="mention hashtag" rel="nofollow noopener" target="_blank">#nondestructive</a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a>

Frédéric RimetWe are excited to share our new promo video for the <a href="https://mastodon.social/tags/BIOLAWEB" class="mention hashtag" rel="nofollow noopener" target="_blank">#BIOLAWEB</a> project! With narration by Srđan Miletić, this video showcases all the activities realised during the BIOLAWEB project thanks to the incredible team, colleagues, and students.<a href="https://mastodon.social/tags/edna" class="mention hashtag" rel="nofollow noopener" target="_blank">#edna</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a> <a href="https://youtu.be/vodGY2SRVls?si=28ENW6Tfh9SisRWP" rel="nofollow noopener" translate="no" target="_blank">https://youtu.be/vodGY2SRVls?si=28ENW6Tfh9SisRWP</a>

Frédéric RimetHappy to announce a new paper of my 0hd student Paula Gauvin: An annotated reference library for supporting DNA metabarcoding analysis of aquatic macroinvertebrates in French freshwater environments <a href="https://mbmg.pensoft.net/article/137772/" rel="nofollow noopener" translate="no" target="_blank">https://mbmg.pensoft.net/article/137772/</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/reference" class="mention hashtag" rel="nofollow noopener" target="_blank">#reference</a> <a href="https://mastodon.social/tags/library" class="mention hashtag" rel="nofollow noopener" target="_blank">#library</a> @pensoft @mbmg

nf-corePipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!Please see the changelog: <a href="https://github.com/nf-core/ampliseq/releases/tag/2.13.0" rel="nofollow noopener" translate="no" target="_blank">https://github.com/nf-core/ampliseq/releases/tag/2.13.0</a><a href="https://mstdn.science/tags/16s" class="mention hashtag" rel="nofollow noopener" target="_blank">#16s</a> <a href="https://mstdn.science/tags/18s" class="mention hashtag" rel="nofollow noopener" target="_blank">#18s</a> <a href="https://mstdn.science/tags/ampliconsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#ampliconsequencing</a> <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener" target="_blank">#edna</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/iontorrent" class="mention hashtag" rel="nofollow noopener" target="_blank">#iontorrent</a> <a href="https://mstdn.science/tags/its" class="mention hashtag" rel="nofollow noopener" target="_blank">#its</a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#pacbio</a> <a href="https://mstdn.science/tags/qiime2" class="mention hashtag" rel="nofollow noopener" target="_blank">#qiime2</a> <a href="https://mstdn.science/tags/rrna" class="mention hashtag" rel="nofollow noopener" target="_blank">#rrna</a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener" target="_blank">#taxonomicclassification</a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener" target="_blank">#taxonomicprofiling</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

NIOO-KNAWNew publication: ParAquaSeq, a Database of Ecologically Annotated rRNA Sequences Covering Zoosporic Parasites Infecting Aquatic Primary Producers in Natural and Industrial Systems. <a href="https://social.edu.nl/tags/aquaticplants" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaticplants</a> <a href="https://social.edu.nl/tags/chytrids" class="mention hashtag" rel="nofollow noopener" target="_blank">#chytrids</a> <a href="https://social.edu.nl/tags/fungalparasites" class="mention hashtag" rel="nofollow noopener" target="_blank">#fungalparasites</a> <a href="https://social.edu.nl/tags/macroalgae" class="mention hashtag" rel="nofollow noopener" target="_blank">#macroalgae</a> <a href="https://social.edu.nl/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://doi.org/10.1111/1755-0998.14099" rel="nofollow noopener" translate="no" target="_blank">https://doi.org/10.1111/1755-0998.14099</a>

AquaEcOmicsGreat talk given in <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> meeting by Florian Altermatt Univ Zurich <a href="https://mastodon.social/tags/Switzerland" class="mention hashtag" rel="nofollow noopener" target="_blank">#Switzerland</a> on the use of aquatic environmental DNA to address local to global biodiversity targets <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/biodiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#biodiversity</a> <a href="https://mastodon.social/tags/nature" class="mention hashtag" rel="nofollow noopener" target="_blank">#nature</a> :-) Thanks a lot Florian for such nice insights aquaecomics.symposium.inrae.fr

AquaEcOmicsThanks to our sponsor Methys <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> <a href="https://mastodon.social/tags/diatom" class="mention hashtag" rel="nofollow noopener" target="_blank">#diatom</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a>

AquaEcOmicsWe thank our sponsors who helped <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> meeting!! Gold sponsor: <a href="https://sylphium.com/eng/" rel="nofollow noopener" translate="no" target="_blank">https://sylphium.com/eng/</a> <a href="https://mastodon.social/tags/evian" class="mention hashtag" rel="nofollow noopener" target="_blank">#evian</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/water" class="mention hashtag" rel="nofollow noopener" target="_blank">#water</a>

AquaEcOmicsGreat opening of <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> meeting given by Isabelle Domaizon <a href="https://mastodon.social/tags/evian" class="mention hashtag" rel="nofollow noopener" target="_blank">#evian</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/water" class="mention hashtag" rel="nofollow noopener" target="_blank">#water</a>… We are 240 attendees on site and 40 online! With more than 120 presentations and 40 posters aquaecomics.symposium.inrae.fr

AquaEcOmicsGood start with an ice breaker 😉 <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> meeting!! <a href="https://mastodon.social/tags/evian" class="mention hashtag" rel="nofollow noopener" target="_blank">#evian</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/metabolomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabolomics</a>

AquaEcOmicsThe meeting place is just neaby lake of Geneva: see the red circle. A great place to talk about aquatic ecosystems and how to protect them! <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> meeting!! <a href="https://mastodon.social/tags/evian" class="mention hashtag" rel="nofollow noopener" target="_blank">#evian</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/metabolomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabolomics</a>

AquaEcOmicsIn three days we'll be meeting in Evian 🙂 <a href="https://mastodon.social/tags/aquaecomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#aquaecomics</a> meeting is coming!! <a href="https://mastodon.social/tags/evian" class="mention hashtag" rel="nofollow noopener" target="_blank">#evian</a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#omics</a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNA</a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mastodon.social/tags/metabolomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabolomics</a>

Frédéric RimetUne offre de post-doc de 1 an renouvelable 1 an : > Finaliser le développement d’une méthode d’identification moléculaire du phytoplancton utilisant le séquençage ADN haut-débit <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a>> CDD post-doc de 1 an, reconductible 1 an : démarrage à partir de mai 2025, Lieu : UMR Carrtel, Thonon <a href="https://fr-carrtel.lyon-grenoble.hub.inrae.fr/" rel="nofollow noopener" translate="no" target="_blank">https://fr-carrtel.lyon-grenoble.hub.inrae.fr/</a>> Projet pluriannuel <a href="https://mastodon.social/tags/OFB" class="mention hashtag" rel="nofollow noopener" target="_blank">#OFB</a> et le projet européen <a href="https://mastodon.social/tags/eDNAquaPlan" class="mention hashtag" rel="nofollow noopener" target="_blank">#eDNAquaPlan</a>> candidature : frederic.rimet@inrae.fr> plus de détails : <a href="https://filesender.renater.fr/?s=download&token=81a4c9dc-5e0f-49eb-a5bc-d83b53abb14d" rel="nofollow noopener" translate="no" target="_blank">https://filesender.renater.fr/?s=download&token=81a4c9dc-5e0f-49eb-a5bc-d83b53abb14d</a>

GBIF Mammut sp.New paper in Molecular Ecology Resources sharing data in <a href="https://ecoevo.social/@gbif" class="u-url mention" rel="nofollow noopener" target="_blank">@gbif</a>: Navigating Past <a href="https://biodiversity.social/tags/Oceans" class="mention hashtag" rel="nofollow noopener" target="_blank">#Oceans</a>: Comparing <a href="https://biodiversity.social/tags/Metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#Metabarcoding</a> and <a href="https://biodiversity.social/tags/Metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Metagenomics</a> of <a href="https://biodiversity.social/tags/Marine" class="mention hashtag" rel="nofollow noopener" target="_blank">#Marine</a> Ancient Sediment Environmental <a href="https://biodiversity.social/tags/DNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#DNA</a> 🇳🇴 <a href="https://biodiversity.social/tags/CiteTheDOI" class="mention hashtag" rel="nofollow noopener" target="_blank">#CiteTheDOI</a>: ✅ <a href="https://biodiversity.social/tags/OpenAccess" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenAccess</a>: ⭐️<a href="https://doi.org/10.1111/1755-0998.14086" rel="nofollow noopener" translate="no" target="_blank">https://doi.org/10.1111/1755-0998.14086</a>

Dr Angel BorjaDid you read this paper? <a class="hashtag" href="https://bsky.app/search?q=%23DNA" rel="nofollow noopener" target="_blank">#DNA</a> <a class="hashtag" href="https://bsky.app/search?q=%23macroinvertebrates" rel="nofollow noopener" target="_blank">#macroinvertebrates</a> <a class="hashtag" href="https://bsky.app/search?q=%23marineEcology" rel="nofollow noopener" target="_blank">#marineEcology</a> <a class="hashtag" href="https://bsky.app/search?q=%23genomics" rel="nofollow noopener" target="_blank">#genomics</a> <a class="hashtag" href="https://bsky.app/search?q=%23metabarcoding" rel="nofollow noopener" target="_blank">#metabarcoding</a> <a class="hashtag" href="https://bsky.app/search?q=%23GES4SEAS" rel="nofollow noopener" target="_blank">#GES4SEAS</a> RE: <a href="https://bsky.app/profile/did:plc:52p2nuqd4stjj7s2qdbf3cpf/post/3lb2gtwtv6c2t" rel="nofollow noopener" target="_blank">https://bsky.app/profile/did:plc:52p2nuqd4stjj7s2qdbf3cpf/post/3lb2gtwtv6c2t</a>

Dr Angel Borja<a class="hashtag" href="https://bsky.app/search?q=%23eDNA" rel="nofollow noopener" target="_blank">#eDNA</a> <a class="hashtag" href="https://bsky.app/search?q=%23Metabarcoding" rel="nofollow noopener" target="_blank">#Metabarcoding</a> <a class="hashtag" href="https://bsky.app/search?q=%23genomics" rel="nofollow noopener" target="_blank">#genomics</a> <a class="hashtag" href="https://bsky.app/search?q=%23ARMS" rel="nofollow noopener" target="_blank">#ARMS</a> RE: <a href="https://bsky.app/profile/did:plc:52p2nuqd4stjj7s2qdbf3cpf/post/3ld6axp5br22s" rel="nofollow noopener" target="_blank">https://bsky.app/profile/did:plc:52p2nuqd4stjj7s2qdbf3cpf/post/3ld6axp5br22s</a>

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