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#VHP4Safety

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Egon Willighagen<p>found two <span class="h-card" translate="no"><a href="https://wikis.world/@magnusmanske" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>magnusmanske</span></a></span>'s Mix'n'Match catalogs important to <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> </p><p>- CoSing ingredients: <a href="https://mix-n-match.toolforge.org/#/catalog/707" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">mix-n-match.toolforge.org/#/ca</span><span class="invisible">talog/707</span></a><br>- ECHA InfoCard: <a href="https://mix-n-match.toolforge.org/#/catalog/1521" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">mix-n-match.toolforge.org/#/ca</span><span class="invisible">talog/1521</span></a></p><p><a href="https://social.edu.nl/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://social.edu.nl/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>chemistry</span></a> <a href="https://social.edu.nl/tags/toxicology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>toxicology</span></a></p>
Egon Willighagen<p>The second day of the 4th <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> hackathon has started. I am in a team that is trying to create a product that will visualize an AOP and map experimental and computed data on top of that. We're thinking of data from the Human Protein Atlas, QSAR models for MIE-protein binding affinities, and link to molecular pathways from <span class="h-card" translate="no"><a href="https://fosstodon.org/@wikipathways" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>wikipathways</span></a></span> </p><p>So, back to hacking!</p><p><a href="https://social.edu.nl/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://social.edu.nl/tags/hackathon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hackathon</span></a></p>
Egon Willighagen<p>we have five problem statements we will work in during this <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> <a href="https://social.edu.nl/tags/hackathon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hackathon</span></a></p>
Egon Willighagen<p><span class="h-card" translate="no"><a href="https://social.edu.nl/@Marvin" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>Marvin</span></a></span> is now starting a demo of the CAP, central access point <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a></p>
Egon Willighagen<p>The 4th <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> hackathon is starting! Theme this time is the User Interface. VHP4Safety is about a next generation safety assessment of chemicals, based on <a href="https://social.edu.nl/tags/FAIR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>FAIR</span></a> and <a href="https://social.edu.nl/tags/OpenScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenScience</span></a></p>
BiGCaT Bioinformatics<p>new paper: "Making PBPK models more reproducible in practice" <a href="https://doi.org/10.1093/bib/bbae569" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1093/bib/bbae569</span><span class="invisible"></span></a></p><p>"We make a proposal aiming to harmonize abbreviations used in PBPK models.<br>To illustrate these recommendations, we present an original and reproducible PBPK model code in MATLAB, alongside an example of<br>MATLAB code converted to Systems Biology Markup Language format using MOCCASIN."</p><p><a href="https://social.edu.nl/tags/SystemsBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SystemsBiology</span></a> <a href="https://social.edu.nl/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://social.edu.nl/tags/matlab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>matlab</span></a> <a href="https://social.edu.nl/tags/SBML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SBML</span></a> <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a></p>
BiGCaT Bioinformatics<p>Fwd: "Advancing AI in <a href="https://social.edu.nl/tags/toxicology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>toxicology</span></a> Insights from the Third <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> Hackathon" <a href="https://www.sciencrew.com/c/9347/a/335221636?title=Advancing_AI_in_Toxicology_Insights_from_the_Third_VHP4Safety_H" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sciencrew.com/c/9347/a/3352216</span><span class="invisible">36?title=Advancing_AI_in_Toxicology_Insights_from_the_Third_VHP4Safety_H</span></a></p>
Egon Willighagen<p>hacking on a BioCypher adapter for the <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> compound wiki</p>
Egon Willighagen<p>will the real Hygromycin B please stand up? <a href="https://social.edu.nl/tags/biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biology</span></a> <a href="https://social.edu.nl/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>chemistry</span></a> <a href="https://social.edu.nl/tags/vhp4safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>vhp4safety</span></a></p>
Egon Willighagen<p>De inschrijving voor het VHP4Safety mini-symposium rondom de promotie van Marvin Martens op 29 januari is geopend! <a href="https://lnkd.in/dmgHTbUH" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">lnkd.in/dmgHTbUH</span><span class="invisible"></span></a> (Beperkt aantal plaatsen) Met sprekers: Chris Evelo (Marvin's promotor), Holly Mortensen, Anne Kienhuis, Joost Beltman en Mathieu Vinken. <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> <a href="https://social.edu.nl/tags/AOPWiki" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AOPWiki</span></a> <a href="https://social.edu.nl/tags/wikipathways" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wikipathways</span></a> </p><p><span class="h-card" translate="no"><a href="https://social.edu.nl/@Marvin" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>Marvin</span></a></span>'s PhD thesis is the result of work in the <a href="https://social.edu.nl/tags/OpenRiskNet" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenRiskNet</span></a> and <a href="https://social.edu.nl/tags/EUToxRisk" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EUToxRisk</span></a> projects</p>
Egon Willighagen<p><span class="h-card"><a href="https://fosstodon.org/@fnielsen" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>fnielsen</span></a></span>'s Synia is cool new <a href="https://social.edu.nl/tags/wikidata" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wikidata</span></a> technology! Here in action (<a href="https://kb.cloud.vhp4safety.nl/" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">kb.cloud.vhp4safety.nl/</span><span class="invisible"></span></a>) for <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a>, hosted on GitHub (<a href="https://github.com/vhP4Safety/synia" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">github.com/vhP4Safety/synia</span><span class="invisible"></span></a>), backed by a Wikibase.Cloud (<a href="https://compoundcloud.wikibase.cloud/" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="">compoundcloud.wikibase.cloud/</span><span class="invisible"></span></a>)</p>
Egon Willighagen<p>Today is the first Virtual Human Platform for Safety Hackathon :) <a href="https://social.edu.nl/tags/VHPHack" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHPHack</span></a> <a href="https://social.edu.nl/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a></p>
Egon Willighagen<p>Next meeting this week: <a href="https://akademienl.social/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a></p>
Egon Willighagen<p>I had a <a href="https://akademienl.social/tags/VHP4Safety" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VHP4Safety</span></a> stakeholder meeting first, but now at the Disease Maps Community meeting in Maastricht</p><p>Sad I missed the first three talks. But Marek Ostaszewski's presentation was very interesting <a href="https://akademienl.social/tags/DMCM2023" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DMCM2023</span></a></p>
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