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Francisco Rodriguez-Sanchez3/ And this is an example <a href="https://ecoevo.social/tags/Rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rmarkdown</a> document and the output Template available here: <a href="https://github.com/Pakillo/grateful/blob/master/Rmd_Quarto/separate_bibliographies/grateful-Rmarkdown-separatebib.Rmd" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/Pakillo/grateful/blob/master/Rmd_Quarto/separate_bibliographies/grateful-Rmarkdown-separatebib.Rmd</a>

Francisco Rodriguez-SanchezWriting manuscripts in <a href="https://ecoevo.social/tags/Quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Quarto</a> or <a href="https://ecoevo.social/tags/Rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rmarkdown</a>?Here's how to easily generate an appendix citing the <a href="https://ecoevo.social/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> packages used with {grateful} <a href="https://pakillo.github.io/grateful" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://pakillo.github.io/grateful</a>1/

Harald Kliems<a href="https://fosstodon.org/tags/knitr" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#knitr</a> <a href="https://fosstodon.org/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RStats</a> <a href="https://fosstodon.org/tags/RMarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RMarkdown</a> question: I have an RMD document that knits together a bunch of child documents (`knitr::knit_child`) that all contain the same 2 images. The images get embedded into the html file, resulting in a huge file size. I could use `self_contained: false` but then I have to futz around with CSS and libraries, which I'd rather not (the output HTML will go into a WordPress site). Is there any way to use a self-contained HTML file, except for the images?

Data ScienceInteractive resizing of picture and table content in Rmd and Quarto: <a href="https://r2resize.obi.obianom.com/index.html" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://r2resize.obi.obianom.com/index.html</a> <a href="https://genomic.social/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> <a href="https://genomic.social/tags/quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#quarto</a> <a href="https://genomic.social/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a>

Cédric VidonneFor branded charts, check out {unhcrthemes}, shared yesterday! Together with {unhcrdown}, it forms a complete ecosystem for UNHCR data viz and reporting.🔗 <a href="https://cran.r-project.org/web/packages/unhcrthemes/index.html" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://cran.r-project.org/web/packages/unhcrthemes/index.html</a><a href="https://fosstodon.org/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> <a href="https://fosstodon.org/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> <a href="https://fosstodon.org/tags/dataviz" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#dataviz</a>

James Hawley, PhD<a href="https://functional.cafe/@kupac" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@kupac</a> I have all these same concerns about notebooks and more. I find <a href="https://scholar.social/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> and <a href="https://scholar.social/tags/quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#quarto</a> much better than Jupyter, but they still suffer from similar problems.Unless I am explicitly planning on compiling an HTML report, I tend to stay away from these literate programming tools.

Darcy R 🇨🇦I’m only just starting using <a href="https://yeg.bike/tags/RMarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RMarkdown</a>. Writing a <a href="https://yeg.bike/tags/GIS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GIS</a> lab has been enjoyable so far. If my life situation was different at graduation, I would have asked <a href="https://mastodon.online/@paezha" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@paezha</a> for a <a href="https://yeg.bike/tags/postdoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#postdoc</a>. I think he uses it and <a href="https://yeg.bike/tags/GitHub" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GitHub</a> to collaborate with his students. There’s also all the cool urban <a href="https://yeg.bike/tags/spatial" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#spatial</a> <a href="https://yeg.bike/tags/accessibility" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#accessibility</a> research he does.

Still Mad About CD PricesHey, <a href="https://infosec.exchange/tags/Rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rstats</a> people: I'm always behind the curve on these things. Should I start using Quarto instead of <a href="https://infosec.exchange/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a>? Is <a href="https://infosec.exchange/tags/Quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Quarto</a> open, accessible, etc.? Is it locked into Rstudio's little world, or is it enshittification-resistant? I'm searching on these topics as well, but if anyone has the straight dope, I'd love to hear it.

kupac^ESC:wq<a href="https://fosstodon.org/@brodriguesco" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@brodriguesco</a> I commend you for pointing this out. I am no fool anymore. (Just made a report template using params yeeey \o/ ) <a href="https://functional.cafe/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> <a href="https://functional.cafe/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a>

Yann Büchau :nixos:Holy cow is <a href="https://fosstodon.org/tags/Rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rmarkdown</a> <a href="https://fosstodon.org/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RStats</a> <a href="https://fosstodon.org/tags/knitr" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#knitr</a> inferior to <a href="https://fosstodon.org/tags/Jupyter" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Jupyter</a>. 😠- WHY does it need to rerun EVERYTHING for hours when making a HTML/PDF? - WHY is the apparent solution (caching) so weird? No clear instructions, only blog posts with broken formatting everywhere. - WHY don't you at least see where it hangs during the process? No indication which line is currently executed? - WHY does making a PDF silently fail after hours?[/rant]

Tyler Smith<a href="https://hachyderm.io/@djnavarro" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@djnavarro</a> I hadn't heard of that, it sounds very interesting. I'm a regular <a href="https://ottawa.place/tags/RMarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RMarkdown</a> user, and haven't found the time or motivation to jump to <a href="https://ottawa.place/tags/Quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Quarto</a>. It looks like a combination of removing the rough spots of RMarkdown, but also expanding the features in a way that adds to my mental overhead.We have a *really* hard time embracing the elegance of a truly minimal system for writing. At this point I'd love to have the absolute minimum set of features beyond basic markdown for academic writing. Maybe <a href="https://ottawa.place/tags/litedown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#litedown</a> is that?

Achim Zeileis📄 New blog post on embedding <a href="https://fosstodon.org/tags/rexams" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rexams</a> exercises in <a href="https://fosstodon.org/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> or <a href="https://fosstodon.org/tags/quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#quarto</a> documentsJoint work with <a href="https://fosstodon.org/@retostauffer" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@retostauffer</a> Generate quizzes for self-paced <a href="https://fosstodon.org/tags/elearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#elearning</a> in <a href="https://fosstodon.org/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> <a href="https://www.r-exams.org/tutorials/exams2forms/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.r-exams.org/tutorials/exams2forms/</a>

Achim ZeileisThis is enabled by the new "exams2forms" <a href="https://fosstodon.org/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> pkg.Can be used more generally to embed interactive exercises into <a href="https://fosstodon.org/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> or <a href="https://fosstodon.org/tags/quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#quarto</a> documents, online books, etc.Already submitted to CRAN but for the moment at:<a href="https://zeileis.R-universe.dev/exams2forms" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://zeileis.R-universe.dev/exams2forms</a>

Kelly SovacoolI'm so desperate I actually posted a question on stack overflow about this 😅 <a href="https://stackoverflow.com/questions/79143394/improving-the-r-traceback-when-rendering-r-markdown-non-interactively" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://stackoverflow.com/questions/79143394/improving-the-r-traceback-when-rendering-r-markdown-non-interactively</a><a href="https://mastodon.social/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> <a href="https://mastodon.social/tags/rlang" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rlang</a> <a href="https://mastodon.social/tags/posit" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#posit</a> <a href="https://mastodon.social/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a>

dbelvezeJ'étais passé à côté de ce package <a href="https://www.rdocumentation.org/packages/WikidataR/versions/2.3.3" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.rdocumentation.org/packages/WikidataR/versions/2.3.3</a> <a href="https://mamot.fr/tags/sparql" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#sparql</a> <a href="https://mamot.fr/tags/wikidata" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#wikidata</a> <a href="https://mamot.fr/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a>

Alex HolcombeUsing RMarkdown Quarto to make lecture slides now, have worked out most of the problems I had initially, and quite happy with using it now. I particularly like the background-image feature , with opacity, making it easy to have a nice unobtrusive background on all one's slides, and that image positioning is now quite easy. Example <a href="https://alexholcombe.github.io/PSYC2016lectures/lecture5distraction.html#/title-slide" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://alexholcombe.github.io/PSYC2016lectures/lecture5distraction.html#/title-slide</a> and code: <a href="https://github.com/alexholcombe/PSYC2016lectures" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/alexholcombe/PSYC2016lectures</a> <a href="https://fediscience.org/tags/Rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rstats</a> <a href="https://fediscience.org/tags/Rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rmarkdown</a>

James Hawley, PhD<a href="https://fediscience.org/@giuseppebilotta" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@giuseppebilotta</a> <a href="https://genomic.social/@mdziemann" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@mdziemann</a> I haven't heard that "offline"/"online" terminology before, but I think that's what I mean.I think of workflow tools like <a href="https://scholar.social/tags/snakemake" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#snakemake</a> or <a href="https://scholar.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> as a kind of "offline" executor, and individual scripts are heavily documented to make them more literate-like. But if I want to collate everything into a legible report of some kind, then I'll reach for <a href="https://scholar.social/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> or <a href="https://scholar.social/tags/QuartoPub" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#QuartoPub</a> to show and explain the results.

Jon HarmonCharlotte Wickham is talking about <a href="https://fosstodon.org/tags/Quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Quarto</a> I was skeptical ("isn't it just <a href="https://fosstodon.org/tags/rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rmarkdown</a> rebranded for python users?") but it has really grown on me. Quarto dashboards via card layouts look really easy, I should play with those more. <a href="https://fosstodon.org/tags/PositConf2024" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PositConf2024</a> <a href="https://fosstodon.org/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RStats</a> <a href="https://fosstodon.org/tags/PyData" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PyData</a> 🧵 8/17

Francisco Rodriguez-SanchezThis new <a href="https://ecoevo.social/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rstats</a> package makes it very easy to monitor outputs for unexpected changes e.g. due to changes in data files or packages used: <a href="https://github.com/brandmaier/reproducibleRchunks" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/brandmaier/reproducibleRchunks</a> Just replace r by reproducibleR in <a href="https://ecoevo.social/tags/Rmarkdown" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Rmarkdown</a> or <a href="https://ecoevo.social/tags/Quarto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Quarto</a> chunks. When rendering you'll get a note if output has changed

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