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#genomicprediction

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Catherine Collingwood Estes<p>...and if you think my last post was just fear-mongering, consider this: &quot;our increasing understanding of human <a href="https://mstdn.social/tags/DNA" class="mention hashtag" rel="tag">#<span>DNA</span></a> could indeed lead to the identification of individual genetic predispositions.&quot; <a href="https://mstdn.social/tags/GenomicPrediction" class="mention hashtag" rel="tag">#<span>GenomicPrediction</span></a> <a href="https://mstdn.social/tags/eugenics" class="mention hashtag" rel="tag">#<span>eugenics</span></a> <a href="https://mstdn.social/tags/IVF" class="mention hashtag" rel="tag">#<span>IVF</span></a> <a href="https://mstdn.social/tags/discrimination" class="mention hashtag" rel="tag">#<span>discrimination</span></a> <a href="https://mstdn.social/tags/Gattaca" class="mention hashtag" rel="tag">#<span>Gattaca</span></a> <a href="https://buff.ly/3BMCKkF" target="_blank" rel="nofollow noopener" translate="no"><span class="invisible">https://</span><span class="">buff.ly/3BMCKkF</span><span class="invisible"></span></a></p>
Catherine Collingwood Estes<p>&quot;...the advent of lab-grown eggs would allow couples to create embryos on an industrial scale – a thousand, or even a million – from which an elite selection could be handpicked.&quot; <a href="https://mstdn.social/tags/eugenics" class="mention hashtag" rel="tag">#<span>eugenics</span></a> <a href="https://mstdn.social/tags/GenomicPrediction" class="mention hashtag" rel="tag">#<span>GenomicPrediction</span></a> <a href="https://mstdn.social/tags/SlipperySlope" class="mention hashtag" rel="tag">#<span>SlipperySlope</span></a> <a href="https://mstdn.social/tags/IVF" class="mention hashtag" rel="tag">#<span>IVF</span></a> <a href="https://buff.ly/3UbzxBu" target="_blank" rel="nofollow noopener" translate="no"><span class="invisible">https://</span><span class="">buff.ly/3UbzxBu</span><span class="invisible"></span></a></p>
scotty86 🇺🇦🕊️<p>"Während die <a href="https://mastodon.social/tags/Geburtenraten" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Geburtenraten</span></a> weltweit im freien Fall sind, wollen einige <a href="https://mastodon.social/tags/SiliconValley" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SiliconValley</span></a> Manager wie Elon <a href="https://mastodon.social/tags/Musk" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Musk</span></a> den Rückgang stoppen - indem sie so viele <a href="https://mastodon.social/tags/Babys" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Babys</span></a> wie möglich bekommen. Die <a href="https://mastodon.social/tags/Pronatalismus" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Pronatalismus</span></a>-Bewegung, die hauptsächlich von religiösen <a href="https://mastodon.social/tags/Konservativen" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Konservativen</span></a> und <a href="https://mastodon.social/tags/Einwanderungsgegnern" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Einwanderungsgegnern</span></a> getragen wird, basiert auf der Überzeugung, dass niedrigere Geburtenraten zu einer wirtschaftlichen und politischen Katastrophe führen werden."</p><p>WTF 👀 </p><p><a href="https://mastodon.social/tags/DesignerBaby" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DesignerBaby</span></a> <a href="https://mastodon.social/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> <a href="https://mastodon.social/tags/USA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>USA</span></a><br><a href="https://www.youtube.com/watch?v=dx3NjGSrpQ8" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">youtube.com/watch?v=dx3NjGSrpQ</span><span class="invisible">8</span></a></p>
Luke Pembleton<p>1/🧵 Interested about how others are structuring their genomic pipelines post-alignment/variant calling for <a href="https://genomic.social/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> <a href="https://genomic.social/tags/GenomicSelection" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicSelection</span></a> <a href="https://genomic.social/tags/RiskScoring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RiskScoring</span></a>. Do you maintain individual sample VCFs extracting the genotype for GEBV calculation or merge multiple into a single VCF for analysis? Or perhaps extract genotype calls per sample, storing in a DB, and then pulling from the DB for routine downstream analysis? 🧬🖥️</p>
Physalia-courses<p>Registrations are now open for the 4th edition of the <a href="https://mas.to/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> course with <span class="h-card"><a href="https://genomic.social/@OscarGenomics" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>OscarGenomics</span></a></span> and Evangelina Lopez de Maturana in February.</p><p>Check it out: <a href="https://physalia-courses.org/courses-workshops/course49b/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">physalia-courses.org/courses-w</span><span class="invisible">orkshops/course49b/</span></a></p><p><a href="https://mas.to/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://mas.to/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mas.to/tags/Rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Rstats</span></a></p>
Nikos Tsardakas Renhuldt<p>Oh, and obviously I've done a ton of work on <a href="https://scholar.social/tags/oats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>oats</span></a> and <a href="https://scholar.social/tags/GenomeAnnotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomeAnnotation</span></a> and <a href="https://scholar.social/tags/GeneMapping" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GeneMapping</span></a>, and looked at at bunch of different types of data from <a href="https://scholar.social/tags/PlantGenomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PlantGenomes</span></a> - this ended up in a Nature publication on the oat genome with me as one of the first authors: <a href="https://www.nature.com/articles/s41586-022-04732-y" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41586-022</span><span class="invisible">-04732-y</span></a>. <a href="https://scholar.social/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> and <a href="https://scholar.social/tags/PlantBreeding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PlantBreeding</span></a> are things I'm interested in. I've also dabbled in <a href="https://scholar.social/tags/DeepLearning" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DeepLearning</span></a>, mainly <a href="https://scholar.social/tags/ConvNets" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ConvNets</span></a> for protein contact prediction and image segmentation.</p>
Physalia-courses<p>Interested in <a href="https://mas.to/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> or <a href="https://mas.to/tags/GenomicSelection" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicSelection</span></a>?</p><p>👀Have a look at our course with <span class="h-card"><a href="https://genomic.social/@OscarGenomics" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>OscarGenomics</span></a></span> &amp; Evangelina Lopez de Maturana in February.</p><p> 🔗<a href="https://physalia-courses.org/courses-workshops/course49b/" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">physalia-courses.org/courses-w</span><span class="invisible">orkshops/course49b/</span></a></p><p><a href="https://mas.to/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://mas.to/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mas.to/tags/Rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Rstats</span></a> <a href="https://mas.to/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> <br><a href="https://mas.to/tags/GWAS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GWAS</span></a></p>
Martin Johnsson<p>Alright, is there anyone else on here in <a href="https://mastodon.social/tags/AnimalGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AnimalGenetics</span></a> or <a href="https://mastodon.social/tags/AnimalScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AnimalScience</span></a> (and who's looking at the hashtags)? </p><p><a href="https://mastodon.social/tags/LivestockGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>LivestockGenomics</span></a> <a href="https://mastodon.social/tags/GenomicSelection" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicSelection</span></a> <a href="https://mastodon.social/tags/GenomicPrediction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicPrediction</span></a> <a href="https://mastodon.social/tags/QuantitativeGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>QuantitativeGenetics</span></a> <a href="https://mastodon.social/tags/genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genetics</span></a> <a href="https://mastodon.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://mastodon.social/tags/scientists" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>scientists</span></a> and the like :)</p>
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